Dr. Martin Oheim

Journal articles

2026

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Marwa Moulzir, Doriane Hazart, Brigitte Delhomme, Martin Oheim, Clément Ricard. Label-free high-resolution volume imaging of cleared testes. Reproduction [Cambridge], 2026, ⟨10.1093/reprod/xaaf021⟩. ⟨hal-05468462⟩

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Marwa Moulzir, Doriane Hazart, Brigitte Delhomme, Martin Oheim, Clément Ricard. Light as a feather: A novel approach for whole- feather microstructure imaging through tissue clearing and autofluorescence imaging. Annals of Anatomy, 2026, pp.152781. ⟨10.1016/j.aanat.2026.152781⟩. ⟨hal-05471200⟩

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2025

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Abdullah Ahmed, Nuria Alegret, Bethany Almeida, Ramón Alvarez-Puebla, Anne Andrews, et al.. Interfacing with the Brain: How Nanotechnology Can Contribute. ACS Nano, 2025, 19 (11), pp.10630-10717. ⟨10.1021/acsnano.4c10525⟩. ⟨hal-05413699⟩

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Doriane Hazart, Marwa Moulzir, Brigitte Delhomme, Martin Oheim, Clément Ricard. Imaging the enteric nervous system. Frontiers in Neuroanatomy, 2025, 19, pp.1532900. ⟨10.3389/fnana.2025.1532900⟩. ⟨hal-05236146⟩

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Marwa Moulzir, Doriane Hazart, Martin Oheim, Clément Ricard. Label-free, High-resolution Fluorescence Imaging of the Intestinal Wall by Image Scanning and Confocal Microscopy. Gastro Hep Advances, 2025, 4 (10), pp.100735. ⟨10.1016/j.gastha.2025.100735⟩. ⟨hal-05413648⟩

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Ilya Olevsko, Maria Shehadeh, Lakshmanan Eswaran, Dmytro Ohorodniichuk, Eti Teblum, et al.. Modular Hydrogel‐Based Nano‐Bead Emitters for Bright, Homogeneous Fluorescent Thin Films and 3D Architectures. Advanced Optical Materials, 2025, pp.e02454. ⟨10.1002/adom.202502454⟩. ⟨hal-05235666⟩

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Clément Ricard, Doriane Hazart, Brigitte Delhomme, Marwa Moulzir, Irina Rakotoson, et al.. Fast Tissue Clearing and Volume Imaging Techniques for Anatomy. Microscopy Research and Technique, 2025, ⟨10.1002/jemt.70013⟩. ⟨hal-05236179⟩

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Omer Shavit, Hervé Suaudeau, Carine Julien, Hodaya Klimovsky, Natalia Mañas-Chavernas, et al.. Combinatorial sample- and back-focal-plane imaging. Pt. I: Instrument and acquisition parameters affecting BFP images and their analysis. Biophysical Journal, 2025, 0, ⟨10.1016/j.bpj.2025.08.009⟩. ⟨hal-05236016⟩

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A. Singer, F. Trigo, L. Vinel, O. Gruere, I. Llano, et al.. A first morphological and electrophysiological characterization of Fañanas cells of the mouse cerebellum. The Journal of Physiology, 2025, 603 (4), pp.855-871. ⟨10.1113/jp285949⟩. ⟨hal-04803395v2⟩

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Kaitlin Szederkenyi, Liliana Attisano, Martin Oheim, Christopher Yip. BPS2025 – Human astrocyte calcium signaling in a cerebral organoid. Biophysical Journal, 2025, 124 (3), pp.514a. ⟨10.1016/j.bpj.2024.11.2701⟩. ⟨hal-05413967⟩

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2024

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Payvand Arjmand, Samlan Chandran Thodika, Haoyang Li, Elsa Bivas, Martin Oheim, et al.. Complementary Speckle STED Microscopy. ACS photonics, 2024, 12 (2), pp.648-654. ⟨10.1021/acsphotonics.4c01364⟩. ⟨hal-04803371⟩

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Doriane Hazart, Malvyne Rolli-Derkinderen, Brigitte Delhomme, Pascal Derkinderen, Martin Oheim, et al.. L’intestin, lanceur d’alerte, dans les prémices de la maladie de Parkinson. Médecine/Sciences, 2024, 40 (6-7), pp.544-549. ⟨10.1051/medsci/2024082⟩. ⟨hal-04644263⟩

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Hodaya Kilmovsky, Omer Shavit, Martin Oheim, Adi Salomon. Detection of refractive index and imperfection in thin film transparent polymer by back focal plane imaging. EPJ Web of Conferences, 2024, 309, pp.02007. ⟨10.1051/epjconf/202430902007⟩. ⟨hal-04803528⟩

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Ilya Olevsko, Omer Shavit, Moshe Feldberg, Yossi Abulafia, Adi Salomon, et al.. A colour-encoded nanometric ruler for axial super-resolution microscopies. Optics Communications, 2024, 565, pp.130538. ⟨10.1016/j.optcom.2024.130538⟩. ⟨hal-04803501⟩

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Adi Salomon, Martin Oheim. Near-interface sensing, imaging and nanometrology using smart surfaces. EPJ Web of Conferences, 2024, 309, pp.02003. ⟨10.1051/epjconf/202430902003⟩. ⟨hal-04803531⟩

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Kaitlin Szederkenyi, Carine Julien, Bruno Lagarde, Ilya Olevsko, Adi Salomon, et al.. Spatially resolved refractometry, fluorophore-concentration, axial-position, and orientational imaging using an evanescent Bessel beam. EPJ Web of Conferences, 2024, 309, pp.04023. ⟨10.1051/epjconf/202430904023⟩. ⟨hal-04803535⟩

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Kaitlin Szederkenyi, Liliana Attisano, Martin Oheim, Christopher Yip. Characterizing human astrocyte calcium signaling in a cerebral organoid. Biophysical Journal, 2024, 123 (3), pp.556a. ⟨10.1016/j.bpj.2023.11.3359⟩. ⟨hal-04803517⟩

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Hugo Touja, Frédéric Brau, Thierry Bastien, Brigitte Delhomme, Martin Oheim. M-Cube — towards correlative multi-scale light-sheet imaging using a compact, modular and moving illuminator. EPJ Web of Conferences, 2024, 309, pp.04013. ⟨10.1051/epjconf/202430904013⟩. ⟨hal-04803526⟩

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2023

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Clément Ricard, Lidia Alonso-Nanclares, Basilis Zikopoulos, Martin Oheim. Editorial: Methods and applications in frontiers in neuroanatomy. Frontiers in Neuroanatomy, 2023, 17, ⟨10.3389/fnana.2023.1256867⟩. ⟨hal-04803495⟩

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Kaitlin Szederkenyi, Lilliana Attisano, Martin Oheim, Christopher Yip. Morphological heterogeneity of human astrocytes in a cerebral organoid. Biophysical Journal, 2023, 122 (3), pp.541a. ⟨10.1016/j.bpj.2022.11.2864⟩. ⟨hal-04803483⟩

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2022

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Hodaya Klimovsky, Omer Shavit, Carine Julien, Ilya Olevsko, Mohamed Hamode, et al.. Characterizing nanometric thin films with far-field light. Advanced Optical Materials, 2022, ⟨10.1101/2022.08.15.503956⟩. ⟨hal-03879474⟩

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2021

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Carine Julien, Martin Oheim. Optometry for a short-sighted microscope. Biophysical Journal, 2021, 120 (20), pp.4301-4304. ⟨10.1016/j.bpj.2021.09.011⟩. ⟨hal-03879382⟩

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Ilya Olevsko, Kaitlin Szederkenyi, Jennifer Corridon, Aaron Au, Brigitte Delhomme, et al.. A simple, inexpensive and multi‐scale 3‐D fluorescent test sample for optical sectioning microscopies. Microscopy Research and Technique, 2021, ⟨10.1002/jemt.23813⟩. ⟨pasteur-03258371⟩

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Cuong Pham, Karine Hérault, Martin Oheim, Steeve Maldera, Vincent Vialou, et al.. Astrocytes respond to a neurotoxic Aβ fragment with state-dependent Ca 2+ alteration and multiphasic transmitter release. Acta Neuropathologica Communications, 2021, 9 (1), pp.44. ⟨10.1186/s40478-021-01146-1⟩. ⟨hal-03182439⟩

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2020

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Martin Oheim, Adi Salomon, Maia Brunstein. Supercritical Angle Fluorescence Microscopy and Spectroscopy. Biophysical Journal, 2020, 118 (10), pp.2339-2348. ⟨10.1016/j.bpj.2020.03.029⟩. ⟨hal-03103103⟩

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Adam Weissman, Hodaya Klimovsky, Dor Harel, Racheli Ron, Martin Oheim, et al.. Fabrication of Dipole-Aligned Thin Films of Porphyrin J-Aggregates over Large Surfaces. Langmuir, 2020, 36 (4), pp.844-851. ⟨10.1021/acs.langmuir.9b02754⟩. ⟨hal-03103153⟩

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2019

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Martin Oheim, Adi Salomon, Adam Weissman, Maia Brunstein, Ute Becherer. Calibrating Evanescent-Wave Penetration Depths for Biological TIRF Microscopy. Biophysical Journal, 2019, 117 (5), pp.795-809. ⟨10.1016/j.bpj.2019.07.048⟩. ⟨hal-02415033⟩

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Martin Oheim, Adi Salomon, Adam Weissman, Maia Brunstein, Ute Becherer. Calibrating Evanescent-Wave Penetration Depths for Biological TIRF Microscopy. Biophysical Journal, 2019, 117 (5), pp.795-809. ⟨10.1016/j.bpj.2019.07.048⟩. ⟨hal-04136703⟩

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Irina Rakotoson, Brigitte Delhomme, Philippe Djian, Andreas Deeg, Maia Brunstein, et al.. Fast 3-D Imaging of Brain Organoids With a New Single-Objective Planar-Illumination Two-Photon Microscope. Frontiers in Neuroanatomy, 2019, 13, pp.77. ⟨10.3389/fnana.2019.00077⟩. ⟨hal-02415039⟩

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2018

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Maia Brunstein, Adi Salomon, Martin Oheim. Decoding the Information Contained in Fluorophore Radiation Patterns. ACS Nano, 2018, 12 (12), pp.11725-11730. ⟨10.1021/acsnano.8b08696⟩. ⟨hal-02415037⟩

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2015

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Dongdong Li, Karine Hérault, Kathleen Zylbersztejn, Marcel A Lauterbach, Marc Guillon, et al.. Astrocyte VAMP3 vesicles undergo Ca2+ -independent cycling and modulate glutamate transporter trafficking.. The Journal of Physiology, 2015, 593 (13), pp.2807-32. ⟨10.1113/JP270362⟩. ⟨hal-01266219⟩

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Alsu Zamaleeva, Guillaume Despras, Camilla Luccardini, Mayeul Collot, Michel de Waard, et al.. FRET-Based Nanobiosensors for Imaging Intracellular Ca2+ and H+ Microdomains. Sensors, 2015, 15 (9), pp.24662-24680. ⟨10.3390/s150924662⟩. ⟨hal-01303366⟩

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2014

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Martin Oheim, Marcel van ‘T Hoff, Anne Feltz, Alsu Zamaleeva, Jean-Maurice Mallet, et al.. New red-fluorescent calcium indicators for opto-genetics, photoactivation and multi-color imaging.. BBA – Biochimica et Biophysica Acta, 2014, 1843 (10), pp. 2284-2306. ⟨10.1016/j.bbamcr.2014.03.010⟩. ⟨hal-00969335⟩

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Alsu I Zamaleeva, Mayeul Collot, Eloi Bahembera, Céline Tisseyre, Philippe Rostaing, et al.. Cell-penetrating nanobiosensors for pointilistic intracellular Ca2+-transient detection.. Nano Letters, 2014, 14 (6), pp.2994-3001. ⟨10.1021/nl500733g⟩. ⟨hal-00983271⟩

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2013

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Dongdong Li, Karine Herault, Kaetlin Silm, Alexis Evrard, Sonja Wojcik, et al.. Lack of Evidence for Vesicular Glutamate Transporter Expression in Mouse Astrocytes. Journal of Neuroscience, 2013, 33 (10), pp.4434-4455. ⟨10.1523/JNEUROSCI.3667-12.2013⟩. ⟨hal-01542733⟩

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2012

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Mayeul Collot, Christina Loukou, Aleksey V Yakovlev, Christian D Wilms, Dongdong Li, et al.. Calcium Rubies: a family of red-emitting functionalizable indicators for two-photon Ca2+ imaging.. Journal of the American Chemical Society, 2012, 134 (36), pp.14923-14931. ⟨10.1021/ja304018d⟩. ⟨hal-00723345⟩

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2010

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Duane E. Prasuhn, Anne Feltz, Martin Oheim, Juan B. Blanco-Canosa, Kimihiro Susumu, et al.. Quantum Dot Peptide Biosensors for Monitoring Caspase 3 Proteolysis and Calcium Ions. ACS Nano, 2010, 4 ((9)), pp.5487-5497. ⟨10.1021/nn1016132⟩. ⟨hal-00523288⟩

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2009

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Dongdong Li, Karine Hérault, Nicole Ropert, Martin Oheim. FM dyes enter via a store-operated calcium channel and modify calcium signaling of cultured astrocytes. Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (51), pp.21960-21965. ⟨10.1073/pnas.0909109106⟩. ⟨hal-04700452⟩

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Aleksey V. Yakovlev, Feng Zhang, Ali Zulqurnain, Abbasi Azhar-Zahoor, Camilla Luccardini, et al.. Wrapping Nanocrystals with an Amphiphilic Polymer Preloaded with Fixed Amounts of Fluorophore Generates FRET-Based Nanoprobes with a Controlled Donor/Acceptor Ratio. Langmuir, 2009, 25 (5), pp.3232-3239. ⟨10.1021/la8038347⟩. ⟨hal-00421164⟩

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2007

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María Teresa Fernández-Argüelles, Aleksey V Yakovlev, Ralph A Sperling, Camilla Luccardini, Stéphane Gaillard, et al.. Synthesis and characterization of polymer-coated quantum dots with integrated acceptor dyes as FRET-based nanoprobes.. Micro and Nano Letters, 2007, 7 ((9)), pp.2613-2617. ⟨hal-00429364⟩

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María Teresa Fernandez-Argüelles, Aleksey Yakovlev, Ralph A Sperling, Camilla Luccardini, Stéphane Gaillard, et al.. Synthesis and characterization of polymer-coated quantum dots with integrated acceptor dyes as FRET-based nanoprobes.. Nano Letters, 2007, 7 ((9)), pp.2613-7. ⟨10.1021/nl070971d⟩. ⟨hal-00689897⟩

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2006

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Fabien Nadrigny, Isabelle Rivals, Petra Hirrlinger, Annette Koulakoff, Léon Personnaz, et al.. Detecting fluorescent protein expression and co-localisation on single secretory vesicles with linear spectral unmixing. European Biophysics Journal, 2006, 35 (6), pp.533-547. ⟨10.1007/s00249-005-0040-8⟩. ⟨hal-02948101⟩

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2001

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Emmanuel Beaurepaire, Martin Oheim, Jerome Mertz. Ultra-deep two-photon fluorescence excitation in turbid media. Optics Communications, 2001, 188 (1-4), pp.25-29. ⟨10.1016/S0030-4018(00)01156-1⟩. ⟨hal-02372465⟩

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Martin Oheim, Emmanuel Beaurepaire, Emmanuelle Chaigneau, Jerome Mertz, Serge Charpak. Two-photon microscopy in brain tissue: parameters influencing the imaging depth. Journal of Neuroscience Methods, 2001, 111 (1), pp.29-37. ⟨10.1016/S0165-0270(01)00438-1⟩. ⟨hal-02372487⟩

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Martin Oheim, Emmanuel Beaurepaire, Emmanuelle Chaigneau, Jerome Mertz, Serge Charpak. Erratum to ‘Two-photon microscopy in brain tissue: parameters influencing the imaging depth’. Journal of Neuroscience Methods, 2001, 112 (2), pp.205. ⟨10.1016/S0165-0270(01)00495-2⟩. ⟨hal-02372491⟩

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Conference papers

2023

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Andreas Deeg, Federico Trigo, Doriane Hazart, Brigitte Delhomme, Tchyia Zar, et al.. Fast, large-field fluorescence and second-harmonic generation imaging with a single-spinning disk two-photon microscope. 11th EOS ( European Optical Society ) Annual Meeting (EOSAM 2023), Sep 2023, Dijon, France. pp.03002, ⟨10.1051/epjconf/202328703002⟩. ⟨hal-04251722⟩

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Ilya Olevsko-Arad, Moshe Feldberg, Martin Oheim, Adi Salomon. Colour-coded nanoscale calibration and optical quantification of axial fluorophore position. 11th EOS (European Optical Society) Annual Meeting (EOSAM 2023 ), Sep 2023, Dijon, France. pp.09034, ⟨10.1051/epjconf/202328709034⟩. ⟨hal-04251685⟩

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2019

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Maia Brunstein, Anne Talneau, Minh-Châu Nguyễn, Pascal Berto, Anne-Laure Fehrembach, et al.. Nanostructured substrates for super-resolution imaging. Imaging Systems and Applications, 2019, Munich, France. pp.IM3B.6, ⟨10.1364/ISA.2019.IM3B.6⟩. ⟨hal-02415076⟩

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Book sections

2001

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Martin Oheim, Maia Brunstein. Quantifying Colocalisation in Biological Fluorescence Microscopy. Encyclopedia of Life Sciences, John Wiley & Sons, Ltd, pp.1-11, 2001, ⟨10.1002/9780470015902.a0026800⟩. ⟨hal-04077870⟩

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Patents

2020

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Martin Oheim, Adi Salomon. Calibration standard for evanescence microscopy. France, Patent n° : EP3623796A1. 2020. ⟨hal-04077832⟩

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Preprints, Working Papers, …

2025

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Kaitlin Szederkenyi, Aaron Au, Liliana Attisano, Martin Oheim, Christopher Yip. Morphological heterogeneity of human astrocytes in cerebral organoids. 2025. ⟨hal-05413987⟩

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2019

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Martin Oheim. Two-photon imaging induces brain heating and calcium microdomain hyperactivity in cortical astrocytes. 2019. ⟨hal-02415048⟩

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